http://docs.notur.no/resolveuid/2685c5dc68b0dae7bbfa6524a14a359e News for the Stallo cluster and the HPC group at the University of Tromsø 2012-05-10T21:00:00Z sdotNews http://docs.notur.no/resolveuid/c88692650a44752acd6f1b4632b3adcf 2012-05-10T21:00:00Z Espen Tangen http://docs.notur.no/author/eta000

The chemistry package NWCHEM is installed on Stallo. Find runscripts and test-jobs in /global/apps/nwchem.

<p>The chemistry package NWCHEM is installed - both version 6.0 and 6.1 - on Stallo. Find runscripts and test-jobs in /global/apps/nwchem. Currently, only infiniband interconnects are supported.&nbsp;</p> http://docs.notur.no/resolveuid/77744c99e9e83ecf25c007def74d618e 2012-05-06T21:26:03Z Roy Einar Dragseth http://docs.notur.no/author/roy000 <p>The stallo frontend running the core services for the cluster went offline appr. 11PM on Sunday evening. Systems is restored to health now at 12.30 AM Monday 7th.</p> <p>We advice all our users to check that their jobs are still running properly.</p> <p>Sorry for the trouble, The HPC-team.</p> http://docs.notur.no/resolveuid/b267bc7e3e3ed372e17ec97a5b933f00 2012-04-24T13:37:35Z Chris http://docs.notur.no/author/cca002 <h2 class="title">The Schroedinger Suite 2012 includes the following software:</h2> <ul class="simple"> <li>Glide</li> <li>Prime</li> <li>Jaguar</li> <li>QSite</li> <li>MacroModel</li> <li>Library for Impact, Liaison, Jaguar pKa, Epik, QikProp, SiteMap, Strike, Confgen, Minta, LigPrep, Phase, XP Visualizer, PrimeX, MCPro+, Canvas</li> <li>KNIME</li> <li>Maestro</li> </ul> <div class="section"> <h3><a id="module-file-available" name="module-file-available">Module file available:</a></h3> <p>To use Schroedinger, load the schroedinger module as follows:</p> <pre class="literal-block"> $ module load schroedinger/2012.04.05 </pre> </div> <div class="section"> <h3><a id="important-before-starting-using-schroedinger" name="important-before-starting-using-schroedinger">IMPORTANT before starting using Schroedinger:</a></h3> <p>Please copy the $SCHRODINGER/UIT-DOC/schrodinger.hosts to your $HOME/.schrodinger directory as follows:</p> <pre class="literal-block"> $ cp $SCHRODINGER/UIT-DOC/schrodinger.hosts $HOME/.schrodinger </pre> <p>Then have a look at the qargs line and if needed, please modify the wall time accordingly.</p> <p>Further documentation available under:</p> <pre class="literal-block"> $SCHRODINGER/docs </pre> </div> http://docs.notur.no/resolveuid/d82e79a105f17b7745afc03abb6b66dc 2011-12-21T09:32:23Z Steinar Trædal-Henden http://docs.notur.no/author/sth000

a power failure in a rack caused the compute nodes c13-1 to 16-16 to go down. all jobs on these nodes have to be re submitted.

http://docs.notur.no/resolveuid/55f7fa3c748ef479910839115584e027 2011-10-06T07:03:27Z Roy Einar Dragseth http://docs.notur.no/author/roy000 <p>We had a short loss of power from appr. 16:30 to 16:45 Wed. 5th of October.</p> <p>All compute nodes went down and thus all running jobs had to be restarted.</p> <p>You should check if your jobs are running correctly.</p> <p>Sorry for the inconvenience, The HPC Team at UiT.</p> http://docs.notur.no/resolveuid/5e3392b6a834cbe5c11f6ed9d908d84d 2011-09-22T09:04:21Z Roy Einar Dragseth http://docs.notur.no/author/roy000

The HPC group and Institute for Computer Science would like to invited everyone interested in computing to a social gathering.

<p>Details can be found <a class="reference" href="http://www2.uit.no/ikbViewer/page/tavla/artikkel?p_document_id=260296">here</a> .</p> http://docs.notur.no/resolveuid/666174e4c6c9645be4610984b9792e52 2011-08-23T09:38:32Z Steinar Trædal-Henden http://docs.notur.no/author/sth000

R 2.13.1 is installed, and set as new default version

<p>R version 2.13.1 in installed, and set as new default.</p> <p>&nbsp;</p> <p>&nbsp;to load the module type:</p> <p>&nbsp;</p> <p>&nbsp;<strong>module load R</strong></p> <p>&nbsp;</p> <p>to load an older version, type:</p> <p>&nbsp;</p> <strong>module load R/&lt;version number&gt; </strong> <p>&nbsp;eg:</p> <strong>module load R/2.10.0 </strong>