http://docs.notur.no/resolveuid/2685c5dc68b0dae7bbfa6524a14a359e News for the Stallo cluster and the HPC group at the University of Tromsø 2012-01-12T23:00:00Z sdotNews http://docs.notur.no/resolveuid/561bc632cf3fb1df6c6f38bdbaa0e1de 2012-01-12T23:00:00Z Espen Tangen http://docs.notur.no/author/eta000

New guidelines for running Gaussian 09 on Stallo, please look at application support for info!

<p>New guidelines for running Gaussian 09 on Stallo. Thorough test of frequency analysis has shown acceptable scaling up to 16 nodes, and good scaling up to 12 nodes for the latest revision and up to 8 nodes with the default version. For details, see: &nbsp;<a class="external-link" href="http://docs.notur.no/application-support/chemistry-applications/gaussian-1/gaussian-09">http://docs.notur.no/application-support/chemistry-applications/gaussian-1/gaussian-09</a>.</p> <p>Mark: This is only valid for Linda-parallel procedures in Gaussian. For SMP-parallel procedures, you should still limit yourself to 1 node, but should use the whole node unless memory requirements exceeds availability.</p> http://docs.notur.no/resolveuid/19d0817d99063dd083c13bb977ae277e 2012-01-12T23:00:00Z Espen Tangen http://docs.notur.no/author/eta000

The default version of COMSOL Multiphysics will from now on be the latest release. Now this is version 4.2a (4.2.1.166).

<p>On request from Olav Gaute Hellesø, the default version of COMSOL Multiphysics will from now on be the latest release. Now this is version 4.2a (4.2.1.166). If someone discovers reasons to abort this procedure, please do tell us at support-uit.</p> http://docs.notur.no/resolveuid/d82e79a105f17b7745afc03abb6b66dc 2011-12-21T09:32:23Z Steinar Trædal-Henden http://docs.notur.no/author/sth000

a power failure in a rack caused the compute nodes c13-1 to 16-16 to go down. all jobs on these nodes have to be re submitted.

http://docs.notur.no/resolveuid/55f7fa3c748ef479910839115584e027 2011-10-06T07:03:27Z Roy Einar Dragseth http://docs.notur.no/author/roy000 <p>We had a short loss of power from appr. 16:30 to 16:45 Wed. 5th of October.</p> <p>All compute nodes went down and thus all running jobs had to be restarted.</p> <p>You should check if your jobs are running correctly.</p> <p>Sorry for the inconvenience, The HPC Team at UiT.</p> http://docs.notur.no/resolveuid/5e3392b6a834cbe5c11f6ed9d908d84d 2011-09-22T09:04:21Z Roy Einar Dragseth http://docs.notur.no/author/roy000

The HPC group and Institute for Computer Science would like to invited everyone interested in computing to a social gathering.

<p>Details can be found <a class="reference" href="http://www2.uit.no/ikbViewer/page/tavla/artikkel?p_document_id=260296">here</a> .</p> http://docs.notur.no/resolveuid/666174e4c6c9645be4610984b9792e52 2011-08-23T09:38:32Z Steinar Trædal-Henden http://docs.notur.no/author/sth000

R 2.13.1 is installed, and set as new default version

<p>R version 2.13.1 in installed, and set as new default.</p> <p>&nbsp;</p> <p>&nbsp;to load the module type:</p> <p>&nbsp;</p> <p>&nbsp;<strong>module load R</strong></p> <p>&nbsp;</p> <p>to load an older version, type:</p> <p>&nbsp;</p> <strong>module load R/&lt;version number&gt; </strong> <p>&nbsp;eg:</p> <strong>module load R/2.10.0 </strong> http://docs.notur.no/resolveuid/81453825b52487ce90b386cc9b516f87 2011-05-03T10:55:00Z Chris http://docs.notur.no/author/cca002 <h2 class="title">The Schroedinger Suite 2008 includes the following software:</h2> <ul class="simple"> <li>Glide</li> <li>Prime</li> <li>Jaguar</li> <li>QSite</li> <li>MacroModel</li> <li>Library for Impact, Liaison, Jaguar pKa, Epik, QikProp, SiteMap, Strike, Confgen, Minta, LigPrep, Phase, XP Visualizer, PrimeX, MCPro+, Canvas</li> <li>KNIME</li> <li>Maestro</li> </ul> <div class="section"> <h3><a id="module-file-available" name="module-file-available">Module file available:</a></h3> <p>To use Schroedinger, load the schroedinger module as follows:</p> <pre class="literal-block"> $ module load schroedinger/2011.04.19 </pre> </div> <div class="section"> <h3><a id="important-before-starting-using-schroedinger" name="important-before-starting-using-schroedinger">IMPORTANT before starting using Schroedinger:</a></h3> <p>Please copy the $SCHRODINGER/UIT-DOC/schrodinger.hosts to your $HOME/.schrodinger directory as follows:</p> <pre class="literal-block"> $ cp $SCHRODINGER/UIT-DOC/schrodinger.hosts $HOME/.schrodinger </pre> <p>Then have a look at the qargs line and if needed, please modify the wall time accordingly.</p> <p>Further documentation available under:</p> <pre class="literal-block"> $SCHRODINGER/docs </pre> </div>